MersV1, Main, Exploration, bibRecord, 000039

Toward perfect reads: self-correction of short reads via mapping on de Bruijn graphs.

Identifieur interne : 000039 ( Main/Exploration ); précédent : 000038; suivant : 000040

Toward perfect reads: self-correction of short reads via mapping on de Bruijn graphs.

Auteurs : Antoine Limasset [Belgique] ; Jean-François Flot [Belgique] ; Pierre Peterlongo [France]

Source :

Bioinformatics (Oxford, England) [ 1367-4811 ] ; 2020.

RBID : pubmed:30785192

Abstract

Short-read accuracy is important for downstream analyses such as genome assembly and hybrid long-read correction. Despite much work on short-read correction, present-day correctors either do not scale well on large datasets or consider reads as mere suites of k-mers, without taking into account their full-length sequence information.

DOI: 10.1093/bioinformatics/btz102
PubMed: 30785192

Affiliations:

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<front><div type="abstract" xml:lang="en">Short-read accuracy is important for downstream analyses such as genome assembly and hybrid long-read correction. Despite much work on short-read correction, present-day correctors either do not scale well on large datasets or consider reads as mere suites of k-mers, without taking into account their full-length sequence information.</div>
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Toward perfect reads: self-correction of short reads via mapping on de Bruijn graphs.

Toward perfect reads: self-correction of short reads via mapping on de Bruijn graphs.

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Abstract

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